Genes and Diseases Protein Level and Bioinformatics Project

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snseru

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Description

  • exploit knowledge of the fundamental principles of molecular biology to analyze contributions of DNA and proteins to human physiology and behavior
  • identify, select, and query the appropriate database to best answer the bioinformatics question at hand, and effectively and accurately interpret the outcome
  • use information gained from the application of bioinformatics to appreciate its impact on proteomics, epidemiology, and evolutionary biology
  • recognize current and emerging technical challenges and areas of innovation inherent in the field of bioinformatics to target career opportunities and development

For the final project, you will use the gene you identified in the gene annotation project and the protein used in protein annotation project to:

  • Identify the diseases implicated by your gene: genomic features at the gene level. i.e SNPs
  • Identify the diseases implicated at protein level: mutations at protein and structural levels: could include variations in amino acid, motifs, functions etc.

Select one disease either at the gene or protein level and provide more detailed discussion on:

  • Briefly explain the disease mechanism as it relates to the gene/protein
  • The bioinformatics approaches used to identify the specific genomic features implicated
  • Identify and discuss the bioinformatics and data analysis tools to identify the implicated genomic features the disease.
  • Discuss the drug targets identified if any implicated pathway

General requirements:

  • Screenshots must be provided for the tools used.
  • Minimum number of pages is 3 and maximum is 6 pages (750 - 1500 words)
  • Must include references
  • It must be written in a research paper format including an abstract and title.

Content

Excellent

Very Good

Good

Fair

Poor

Points

4

3

2

1

0

General Requirements

All the general requirements are met

Most of the general requirements are met

Some of the general requirements are met

A few general requirements are met

no answer

Abstract

Very well written abstract indicating what the paper is about

Good abstract

Fairly-written abstract

Very vague abstract not indicating what the paper is about

no answer

Disease identification

Identifies diseases and the genomic features at both gene and protein levels

Identifies at the diseases and implicated genomic features only at either protein or gene level

Identifies diseases at both protein and gene level but not the genomic features

Identifies the diseases only at either gene or protein levels and no genomic features

no answer

Disease mechanism

Very well written description of the disease mechanism

Good description of the disease mechanism

Fair description of the disease mechanism

Vague description of the disease mechanism

no answer

Bioinformatics approaches

Clearly describes the bioinformatics approaches

Good description of the bioinformatics approaches

Fair description of the bioinformatics approaches

Vague description of the bioinformatics approaches

No answer

Bioinformatics and data analysis tools

Correct and good discussion identification of bioinformatics & data analysis tool

Correct tools are identified and fairly -discussed

Correct tools are identified but no discussion

Identified tools cannot be used for identifying implicated genomic features in the selected disease

No answer

Drug targets & pathways

Identifies the correct drug targets and the implicated pathways

Identifies the drug targets but not the pathways

Identifies the pathway but no drugs

Wrong identifications of pathways and drug targets

No answer

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Explanation & Answer

Attached.

Running Head: GENES AND DISEASES

Genes and Diseases
Student’s Name
Institutional Affiliation

1

GENES AND DISEASES

2
GENES AND DISEASES

Abstract
A genetic disease is a disorder that is usually caused by one or many abnormalities in the
structure of the gene. Many genetic disorders are rare, but they are often fatal and can lead to
death for some have no medical intervention. Genetic disorders are usually hereditary from
generation to generation. This paper will identify the genetic disease caused by the gene GS115
that is produced by Pichia pastoris and also identify the disease caused by the protein adenylate
kinase (ADK) that is produced from the gene GS115. The paper will then narrow down two one
of the disorders and describe its mechanism. Then the paper will mention and describe some of
the bioinformatics tools that can be used to identify particular genomes concerning the disease
shown amongst the two conditions. Lastly, the paper will discuss the drug targets in the
implicated pathway.

GENES AND DISEASES

3

Introduction
A genetic disease is a disorder that is usually caused by one or many abnormalities in the
structure of the gene. Many genetic diseases are rare, but they are often fatal and can lead to
death for some have no medical intervention. Genetic disorders are usually hereditary from
generation to generation.
Disease identification
The previous paper of protein annotation handled the gene GS115 that is produced by the
fungi Pichia Pastoris. The gene is known to cause several diseases, but the most common
genetic disorder caused by GS115 is Phenylketonuria (PKU) which is an innate error in
metabolism that always leads to mental retardation if left untreated (Boycott et al., 2017). Also,
PKU can lead to seizures and behavioral problems as well as intellectual disability. Besides, it
also causes a musty and lighter skin.
Genomic features
PKU is usually caused by a defective gene which can make the disorder to be either mild
or moderate or severe. A person with PKU lacks the necessary enzyme needed to process
phenylalanine which is an amino acid (Boycott et al., 2017). Therefore, due to the absence of the
essential enzyme, phenylalanine will build-up making an...


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