Bioinformatics: Manipulating Proteins Using Jmol

Anonymous
timer Asked: Mar 17th, 2016

Question description

For this assignment you need to use Jmol. Please don't bid on this question if you are unfamiliar with the tool !

Directions: 

1. Go to http://bioinformatics.org/firstglance/fgij/ 

2. Enter protein code 4NG4 (select 'Use Java' box if you have it on your computer; if not leave it unchecked)

3. Obtain the following molecular pictures and take screenshots of each

       a) Cartoon View of protein, ligand in CPK specify

       b) Spacefill CPK of protein, ligand spacefill green

       c) View of isolated active site (7-10 Angstroms), including ligand

        d) Stick scheme view with significant H-bonds between the ligand and protein

        e) Slabbed view of specify CPK protein with hydrophobic residues colored in yellow

Send screenshots of images upon completion.

Again, only bid on this question if you are proficient with Jmol as this is urgent !!!


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